PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A05G3123
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family MYB
Protein Properties Length: 219aa    MW: 25308.6 Da    PI: 8.0238
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A05G3123genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.6e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g W  eEd+ll+d+v+ +G+g+W++Ia++ g++R++k+c++rw +yl
      Gh_A05G3123 13 KGLWAMEEDKLLIDYVNVHGKGQWNKIANRTGLKRSGKSCRLRWMNYL 60
                     577999****************************************97 PP

2Myb_DNA-binding58.12e-1866111148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g +++eE++l ++++k+lG++ W++Ia++++ gRt++q+k++w+++l
      Gh_A05G3123  66 KGDFSEEEEDLVIRLHKLLGNR-WSLIAKRVP-GRTDNQVKNYWNSHL 111
                      689*******************.*********.************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129415.142160IPR017930Myb domain
SMARTSM007171.7E-131262IPR001005SANT/Myb domain
SuperFamilySSF466894.39E-3012107IPR009057Homeodomain-like
PfamPF002492.8E-161360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-221467IPR009057Homeodomain-like
CDDcd001671.47E-101960No hitNo description
PROSITE profilePS5129428.76761115IPR017930Myb domain
SMARTSM007171.7E-1865113IPR001005SANT/Myb domain
PfamPF002491.4E-1766111IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.1E-2768115IPR009057Homeodomain-like
CDDcd001675.51E-1369111No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048765Biological Processroot hair cell differentiation
GO:0090377Biological Processseed trichome initiation
GO:0090378Biological Processseed trichome elongation
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MSMKKEGEIL YKKGLWAMEE DKLLIDYVNV HGKGQWNKIA NRTGLKRSGK SCRLRWMNYL  60
SPNVKKGDFS EEEEDLVIRL HKLLGNRWSL IAKRVPGRTD NQVKNYWNSH LRKKLGIIDQ  120
NKTRIDFCQS SKQVKVCHVD EAATDPSPGH GTTTETTGIT VDQSNQQEVI DHRVLNNTTQ  180
ESMTSESYIN TFWIPDHDYE LSTLAMIDHF HECSSFHLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-29131157108B-MYB
1h8a_C4e-291311527128MYB TRANSFORMING PROTEIN
Search in ModeBase
Expression -- Microarray ? help Back to Top
Source ID E-value
GEO344519070.0
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT7515230.0KT751523.1 Gossypium hirsutum MYB109 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012458020.11e-150PREDICTED: transcription factor WER
SwissprotQ9SEI03e-73WER_ARATH; Transcription factor WER
TrEMBLA0A140EXN71e-165A0A140EXN7_G
STRINGAT5G14750.18e-71(Arabidopsis thaliana)
STRINGfgenesh2_kg.6__1454__AT5G14750.18e-71(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14750.12e-74myb domain protein 66
Publications ? help Back to Top
  1. Suo J,Liang X,Pu L,Zhang Y,Xue Y
    Identification of GhMYB109 encoding a R2R3 MYB transcription factor that expressed specifically in fiber initials and elongating fibers of cotton (Gossypium hirsutum L.).
    Biochim. Biophys. Acta, 2003. 1630(1): p. 25-34
    [PMID:14580676]